2W47

Clostridium thermocellum CBM35 in complex with delta-4,5- anhydrogalacturonic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 2W47

Classification: HYDROLASE

Total Structure Weight: 16105.66

Macromolecule Entities
Molecule Chains Length Organism Details
LIPOLYTIC ENZYME, G-D-S-L A 144 Ruminiclostridium thermocellum Fragment: CARBOHYDRATE BINDING DOMAIN, RESIDUES 479-611
Gene Name(s): Cthe_3141
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UNF
Query on UNF

A 4-O-(4-deoxy-beta-L-threo-hex-4-enopyranuronosyl)- beta-D-galactopyranuronic acid
C12 H16 O12
LLVVMXFNKAHVEZ-KMBKDFKYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
UNF N/A in BindingDB
N/A in BindingMoad
Kd: 10500 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.188
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 86.03 α = 90.00
b = 86.03 β = 90.00
c = 75.90 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-21
  • Released Date: 2009-01-27
  • Deposition author(s): Montainer, C., Lammerts van Bueren, A., Dumon, C., Flint, J.E., Correia, M.A., Prates, J.A., Firbank, S.J., Lewis, R.J., Grondin, G.G., Ghinet, M.G., Gloster, T.M., Herve, C., Knox, J.P., Talbot, B.G., Turkenburg, J.P., Kerovuo, J., Brzezinski, R., Fontes, C.M.G.A., Davies, G.J., Boraston, A.B., Gilbert, H.J.

Revision History

  • Version 1_0: 2009-01-27

    Type: Initial release

  • Version 1_1: 2012-04-04

    Type: Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance

  • Version 1_2: 2017-06-28

    Type: Data collection