2VYP

RABBIT-MUSCLE G-ACTIN IN COMPLEX WITH MYXOBACTERIAL RHIZOPODIN

Structural Biology Knowledgebase: 2VYP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VYP

Classification: CONTRACTILE PROTEIN

Total Structure Weight: 87193.66

Macromolecule Entities
Molecule Chains Length Organism Details
ACTIN, ALPHA SKELETAL MUSCLE A, B 377 Oryctolagus cuniculus Gene Name(s): ACTA1 Gene View ACTA

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RH9
Query on RH9

A RHIZOPODIN
C78 H124 N4 O22
MWDPPGCTEBRUNT-IKBNIWNCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ATP
Query on ATP

A, B ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEZ
Query on HEZ

A HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.186
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 77.65 α = 90.00
b = 194.86 β = 90.00
c = 53.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-25
  • Released Date: 2009-02-24
  • Deposition author(s): Hagelueken, G., Albrecht, S.C., Steinmetz, H., Jansen, R., Heinz, D.W., Kalesse, M., Schubert, W.-D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4