ALPHA-AMANITIN INHIBITED COMPLETE RNA POLYMERASE II ELONGATION COMPLEX     DOI:10.2210/pdb2vum/pdb   NDB ID: 2VUM

2VUM Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Primary Citation       Molecular Description Hide Classification: Transferase Structure Weight: 531506.25   Molecule: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 Polymer: 1 Type: polypeptide(L) Length: 1733 Chains: A EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 Polymer: 2 Type: polypeptide(L) Length: 1224 Chains: B EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 Polymer: 3 Type: polypeptide(L) Length: 318 Chains: C EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 Polymer: 4 Type: polypeptide(L) Length: 221 Chains: D EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 Polymer: 5 Type: polypeptide(L) Length: 215 Chains: E EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 Polymer: 6 Type: polypeptide(L) Length: 155 Chains: F EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 Polymer: 7 Type: polypeptide(L) Length: 171 Chains: G EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 Polymer: 8 Type: polypeptide(L) Length: 146 Chains: H EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 Polymer: 9 Type: polypeptide(L) Length: 122 Chains: I EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 Polymer: 10 Type: polypeptide(L) Length: 70 Chains: J EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 Polymer: 11 Type: polypeptide(L) Length: 120 Chains: K EC#: 2.7.7.6    Molecule: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 Polymer: 12 Type: polypeptide(L) Length: 70 Chains: L Molecule: AMATOXIN Polymer: 13 Type: polypeptide(L) Length: 8 Chains: M Molecule: 5'-D(*AP*AP*AP*CP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' Polymer: 14 Type: polydeoxyribonucleotide Length: 14 Chains: N Molecule: 5'-R(*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' Polymer: 15 Type: polyribonucleotide Length: 11 Chains: P Molecule: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *GP*TP*TP*AP*CP*GP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' Polymer: 16 Type: polydeoxyribonucleotide Length: 26 Chains: T       Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 2 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 3 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 4 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 5 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 6 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 7 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 8 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 9 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 10 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 11 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 12 Scientific Name: Saccharomyces cerevisiae Common Name: Bakers' yeast   Polymer: 13 Scientific Name: Amanita phalloides Common Name: Death cap   Polymer: 14 Scientific Name: Synthetic construct   Polymer: 15 Scientific Name: Synthetic construct   Polymer: 16 Scientific Name: Synthetic construct         Related PDB Entries Hide Id Details 1A1D  YEAST RIBONUCLEIC ACID POLYMERASE SUBUNIT RPB8, NMR, MINIMIZED AVERAGE STRUCTURE, ALPHA CARBONS ONLY  1DZF  RPB5 FROM S.CEREVISIAE  1I3Q  RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION  1I50  RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION  1I6H  RNA POLYMERASE II ELONGATION COMPLEX  1K83  CRYSTAL STRUCTURE OF YEAST RNA POLYMERASE II COMPLEXED WITHTHE INHIBITOR ALPHA AMANITIN  1NIK  WILD TYPE RNA POLYMERASE II  1NT9  COMPLETE 12-SUBUNIT RNA POLYMERASE II  1PQV  RNA POLYMERASE II-TFIIS COMPLEX  1R5U  RNA POLYMERASE II TFIIB COMPLEX  1R9S  RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX,MATCHED NUCLEOTIDE  1R9T  RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX,MISMATCHED NUCLEOTIDE  1SFO  RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX  1TWA  RNA POLYMERASE II COMPLEXED WITH ATP  1TWC  RNA POLYMERASE II COMPLEXED WITH GTP  1TWF  RNA POLYMERASE II COMPLEXED WITH UTP AT 2.3 A RESOLUTION  1TWG  RNA POLYMERASE II COMPLEXED WITH CTP  1TWH  RNA POLYMERASE II COMPLEXED WITH 2'DATP  1WCM  COMPLETE 12-SUBUNIT RNA POLYMERASE II AT 3.8 A  1Y14  CRYSTAL STRUCTURE OF YEAST SUBCOMPLEX OF RPB4 AND RPB7  1Y1V  REFINED RNA POLYMERASE II-TFIIS COMPLEX  1Y1W  COMPLETE RNA POLYMERASE II ELONGATION COMPLEX  1Y1Y  RNA POLYMERASE II-TFIIS-DNA/RNA COMPLEX  1Y77  COMPLETE RNA POLYMERASE II ELONGATION COMPLEX WITHSUBSTRATE ANALOGUE GMPCPP  2B63  COMPLETE RNA POLYMERASE II-RNA INHIBITOR COMPLEX  2B8K  12-SUBUNIT RNA POLYMERASE II  2JA5  CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX A  2JA6  CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX B  2JA7  CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX C  2JA8  CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX D        Ligand Chemical Component Hide Identifier Name Formula Interaction View Links MG     MAGNESIUM ION Mg Ligand Explorer ZN     ZINC ION Zn Ligand Explorer       Modified Residues Hide Identifier Name Formula Interaction View Links HYP 4-HYDROXYPROLINE (parent: PRO)(type: lPeptideLinking) C5 H9 N O3 Ligand Explorer ILX 4,5-DIHYDROXYISOLEUCINE (parent: ILE)(type: lPeptideLinking) C6 H13 N O4 Ligand Explorer TRX 6-HYDROXYTRYPTOPHAN (parent: TRP)(type: lPeptideLinking) C11 H12 N2 O3 Ligand Explorer CSX S-OXY CYSTEINE (parent: CYS)(type: lPeptideLinking) C3 H7 N O3 S Ligand Explorer BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE (parent: DU)(type: dnaLinking) C9 H12 Br N2 O8 P Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (9 Domains) PFAM Classification - (25 Domains) GO Terms - (145 Terms)     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Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors and generated by PISA (software)         Deposition Summary Hide Authors:   Brueckner, F.,   Cramer, P. Deposition:   2008-05-27 Release:   2008-06-17 Last Modified (REVDAT):   2009-08-25       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:    [ EDS ] Resolution[Å]: 3.40 R-Value: 0.255 (obs.) R-Free: 0.288 Space Group: C 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 220.62 α = 90.00  b = 394.23 β = 90.00  c = 283.97 γ = 90.00        Structure Links Hide Molecule of the Month Features: RNA Polymerase