2VRY

Mouse Neuroglobin with heme iron in the reduced ferrous state

Structural Biology Knowledgebase: 2VRY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 2VRY

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 18115.32

Macromolecule Entities
Molecule Chains Length Organism Details
NEUROGLOBIN A 154 Mus musculus Mutation: C55S, C120S
Details: THE PROTEIN CONTAINS THREE ADDITIONAL AMINO ACIDS AT THE N TERM GLY, SER, HIS
Gene Name(s): Ngb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.185
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 87.92 α = 90.00
b = 87.92 β = 90.00
c = 113.65 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-16
  • Released Date: 2008-05-06
  • Deposition author(s): Arcovito, A., Moschetti, T., D'Angelo, P., Mancini, G., Vallone, B., Brunori, M., Della Longa, S.

Revision History

  • 2014-10-22
    Type: Citation | Details: JRNL
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor