2VE7

Crystal structure of a bonsai version of the human Ndc80 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 2VE7

Classification: CELL CYCLE

Total Structure Weight: 131061.84

Macromolecule Entities
Molecule Chains Length Organism Details
KINETOCHORE PROTEIN HEC1, KINETOCHORE PROTEIN SPC25 A, B 315 Homo sapiens Fragment: CHIMERA OF NDC80 RESIDUES 80-286 WITH SPC25 RESIDUES 118-224
Mutation: N1224Q
Details: PEPTIDE LINK BETWEEN RESI 286 AND RESI 1118
Gene Name(s): NDC80 Gene View HEC HEC1 KNTC2 SPC25 Gene View SPBC25 AD024
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
KINETOCHORE PROTEIN NUF2, KINETOCHORE PROTEIN SPC24 C, D 250 Homo sapiens Fragment: CHIMERA OF NUF2 RESIDUES 1-169 WITH SPC24 RESIDUES 122-197
Mutation: D1152E, E72G
Details: PEPTIDE LINK BETWEEN RESI 169 AND RESI 1122
Gene Name(s): SPC24 Gene View SPBC24 NUF2 Gene View CDCA1 NUF2R
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IPH
Query on IPH

C, D PHENOL
C6 H6 O
ISWSIDIOOBJBQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.232
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 157.65 α = 90.00
b = 248.96 β = 90.00
c = 58.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-17
  • Released Date: 2008-05-13
  • Deposition author(s): Ciferri, C., Pasqualato, S., Dos Reis, G., Screpanti, E., Maiolica, A., Polka, J., De Luca, J.G., De Wulf, P., Salek, M., Rappsilber, J., Moores, C.A., Salmon, E.D., Musacchio, A.

Revision History

  • Version 1_0: 2008-05-13

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Refinement description, Version format compliance

  • Version 1_2: 2017-06-21

    Type: Refinement description