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FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN
 
 
DOI:10.2210/pdb2vc9/pdb
2VC9
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 102702.49
     
    Molecule:ALPHA-N-ACETYLGLUCOSAMINIDASE
    Polymer:1Type:polypeptide(L)Length:891
    Chains:A
    EC#:3.2.1.50 Go to IUBMB EC entry  
    Fragment:RESIDUES 26-916
     
     
  •  
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    Polymer: 1
    Scientific Name: Clostridium perfringens Go to NCBI Taxonomy entry Expression System: Escherichia coli  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    2VCA  FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH BETA-N-ACETYL -D-GLUCOSAMINE 
    2VCB  FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH PUGNAC 
    2VCC  FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    CA     CALCIUM ION Ca 3DLigand Explorer Link out to Ligand Expos:CA Link out to SuperLigands:CA Link out to SuperHapten:CA
    GOL     GLYCEROL C3 H8 O3 3DLigand Explorer Link out to Ligand Expos:GOL Link out to SuperLigands:GOL Link out to SuperHapten:GOL
    NOK     2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN C8 H16 N2 O4 3DLigand Explorer Link out to Ligand Expos:NOK Link out to SuperLigands:NOK Link out to SuperHapten:NOK
     
     
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Biological assembly assigned by authors and generated by PQS (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Ficko-Blean, E.,   Stubbs, K.A.,   Berg, O.,   Vocadlo, D.J.,   Boraston, A.B.

    Deposition:   2007-09-19
    Release:   2008-03-18
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.36
    R-Value: 0.205 (obs.)
    R-Free: 0.246
    Space Group: P 61
    Unit Cell:
      Length [Å] Angles [°]
    a = 90.96 α = 90.00 
    b = 90.96 β = 90.00 
    c = 252.40 γ = 120.00