2V9U

Rim domain of main porin from Mycobacteria smegmatis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.273 
  • R-Value Observed: 0.274 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Designed Protein-Protein Association.

Grueninger, D.Treiber, N.Ziegler, M.O.P.Koetter, J.W.A.Schulze, M.-S.Schulz, G.E.

(2008) Science 319: 206

  • DOI: https://doi.org/10.1126/science.1150421
  • Primary Citation of Related Structures:  
    2UYU, 2UYV, 2V7G, 2V9E, 2V9F, 2V9G, 2V9I, 2V9L, 2V9M, 2V9N, 2V9O, 2V9U

  • PubMed Abstract: 

    The analysis of natural contact interfaces between protein subunits and between proteins has disclosed some general rules governing their association. We have applied these rules to produce a number of novel assemblies, demonstrating that a given protein can be engineered to form contacts at various points of its surface. Symmetry plays an important role because it defines the multiplicity of a designed contact and therefore the number of required mutations. Some of the proteins needed only a single side-chain alteration in order to associate to a higher-order complex. The mobility of the buried side chains has to be taken into account. Four assemblies have been structurally elucidated. Comparisons between the designed contacts and the results will provide useful guidelines for the development of future architectures.


  • Organizational Affiliation

    Institut für Organische Chemie und Biochemie, Albert-Ludwigs-Universität, Albertstrasse 21, 79104 Freiburg im Breisgau, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MSPA
A, B, C, D, E
A, B, C, D, E, F, G, H
132Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
UniProt
Find proteins for A0QR29 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0QR29 
Go to UniProtKB:  A0QR29
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0QR29
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.273 
  • R-Value Observed: 0.274 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 139.377α = 90
b = 105.652β = 109.26
c = 102.963γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-01-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2024-05-08
    Changes: Data collection, Database references, Other