2V9L

L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y-E192A)

Structural Biology Knowledgebase: 2V9L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Observed: 0.090

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2V9L

Classification: LYASE

Total Structure Weight: 31156.89

Macromolecule Entities
Molecule Chains Length Organism Details
RHAMNULOSE-1-PHOSPHATE ALDOLASE A 274 Escherichia coli EC#: 4.1.2.19 IUBMB
Mutation: Q6Y, E192A
Gene Name(s): rhaD rhuA b3902 JW3873

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGO
Query on PGO

A S-1,2-PROPANEDIOL
C3 H8 O2
DNIAPMSPPWPWGF-VKHMYHEASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Observed: 0.090
  • Space Group: P 4 21 2

Unit Cell:

Length (Å) Angle (°)
a = 107.06 α = 90.00
b = 107.06 β = 90.00
c = 57.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-08-24
  • Released Date: 2008-01-15
  • Deposition author(s): Grueninger, D., Schulz, G.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4