2V0M

Crystal structure of human P450 3A4 in complex with ketoconazole


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 2V0M

Classification: OXIDOREDUCTASE

Total Structure Weight: 228643.31

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME P450 3A4 A, B, C, D 485 Homo sapiens Fragment: SOLUBLE DOMAIN, RESIDUES 24-502
Mutation: W392V
Gene Name(s): CYP3A4 Gene View CYP3A3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
KLN
Query on KLN

A, B, C, D 1-ACETYL-4-(4-{[(2S,4R)-2-(2,4-DICHLOROPHENYL)- 2-(1H-IMIDAZOL-1-YLMETHYL)-1,3-DIOXOLAN-4- YL]METHOXY}PHENYL)PIPERAZINE
C26 H28 Cl2 N4 O4
XMAYWYJOQHXEEK-ZEQKJWHPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.218
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 228.94 α = 90.00
b = 66.36 β = 102.80
c = 146.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-15
  • Released Date: 2007-06-26
  • Deposition author(s): Sjogren, T., Ekroos, M.
  • Previous versions: 2J0C

Revision History

  • 2011-08-03
    Type: Database references, Other, Refinement description, Version format compliance