2R17

Functional architecture of the retromer cargo-recognition complex

Structural Biology Knowledgebase: 2R17 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.216

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2R17

Classification: PROTEIN TRANSPORT

Total Structure Weight: 110921.58

Macromolecule Entities
Molecule Chains Length Organism Details
Vacuolar protein sorting-associated protein 29 A, B 183 Homo sapiens Gene Name(s): VPS29 Gene View DC15 DC7 MDS007
Vacuolar protein sorting-associated protein 35 C, D 298 Homo sapiens Gene Name(s): VPS35 Gene View MEM3 TCCCTA00141

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.216
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.25 α = 90.00
b = 128.47 β = 90.00
c = 140.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-08-22
  • Released Date: 2007-10-30
  • Deposition author(s): Hierro, A., Rojas, A.L., Rojas, R., Murthy, N., Effantin, G., Kajava, A.V., Steven, A.C., Bonifacino, J.S., Hurley, J.H.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4