2QQN

Neuropilin-1 b1 Domain in Complex with a VEGF-Blocking Fab

Structural Biology Knowledgebase: 2QQN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.159

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2QQN

Classification: SIGNALING PROTEIN

Total Structure Weight: 65786.13

Macromolecule Entities
Molecule Chains Length Organism Details
Neuropilin-1 A 159 Homo sapiens Fragment: F5/8 type C 1 domain
Gene Name(s): NRP1 Gene View NRP VEGF165R
Antibody heavy chain H 230 Homo sapiens
Antibody light chain L 214 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, H, L 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.159
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 214.12 α = 90.00
b = 214.12 β = 90.00
c = 45.47 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-26
  • Released Date: 2007-11-20
  • Deposition author(s): Appleton, B.A., Wiesmann, C.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4