2QD9

P38 Alpha Map Kinase inhibitor based on heterobicyclic scaffolds


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.251

Literature

Macromolecules
Sequence Display for 2QD9

Classification: TRANSFERASE

Total Structure Weight: 42655.52

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 14 A 366 Homo sapiens EC#: 2.7.11.24 IUBMB
Gene Name(s): MAPK14 Gene View CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LGF
Query on LGF

A 1-[(3AR)-5-{[3-(2,4-DIFLUOROPHENYL)-5,6-DIHYDROIMIDAZO[1,5- A]PYRAZIN-7(8H)-YL]CARBONYL}-6-METHOXY-3AH- PYRROLO[2,3-B]PYRIDIN-3-YL]-2-[(3R)-3-HYDROXYPYRROLIDIN- 1-YL]-2-OXOETHANONE
3,11-DIFLUORO-6,8,13-TRIMETHYL-8H-QUINO[4,3,2- KL]ACRIDIN-13-IUM (Synonym)
C27 H24 F2 N6 O5
LXYRGMYSFZBUSV-SJLPKXTDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LGF N/A in BindingDB
IC50: 13 nM  BindingMOAD
IC50: 13 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.251
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.65 α = 90.00
b = 74.36 β = 90.00
c = 78.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-06-20
  • Released Date: 2007-08-21
  • Deposition author(s): Sack, J.S.

Revision History

  • Version 1_0: 2007-08-21

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance