2Q8G

Structure of pyruvate dehydrogenase kinase isoform 1 in complex with glucose-lowering drug AZD7545

Structural Biology Knowledgebase: 2Q8G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Q8G

Classification: TRANSFERASE

Total Structure Weight: 46880.07

Macromolecule Entities
Molecule Chains Length Organism Details
[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1 A 407 Homo sapiens EC#: 2.7.11.2 IUBMB
Gene Name(s): PDK1 Gene View PDHK1

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AZX
Query on AZX

A 4-[(3-CHLORO-4-{[(2R)-3,3,3-TRIFLUORO-2-HYDROXY- 2-METHYLPROPANOYL]AMINO}PHENYL)SULFONYL]- N,N-DIMETHYLBENZAMIDE
C19 H18 Cl F3 N2 O5 S
DTDZLJHKVNTQGZ-GOSISDBHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AZX N/A in BindingDB
IC50: 87 nM  BindingMOAD
IC50: 87 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.212
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.98 α = 90.00
b = 96.98 β = 90.00
c = 111.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-06-10
  • Released Date: 2007-07-24
  • Deposition author(s): Kato, M., Li, J., Chuang, J.L., Chuang, D.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values