2PUV

The crystal structure of isomerase domain of glucosamine-6-phosphate synthase from Candida albicans

Structural Biology Knowledgebase: 2PUV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2PUV

Classification: TRANSFERASE

Total Structure Weight: 166144.72

Macromolecule Entities
Molecule Chains Length Organism Details
isomerase domain of glutamine-fructose-6-phosphate transaminase (isomerizing) A, B, C, D 367 Candida albicans EC#: 2.6.1.16 IUBMB
Fragment: isomerase domain
Gene Name(s): GFA1 CaO19.1618
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UD1
Query on UD1

A, B, C, D URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
C17 H27 N3 O17 P2
LFTYTUAZOPRMMI-CFRASDGPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
M6R
Query on M6R

A, B, C, D 5-AMINO-5-DEOXY-1-O-PHOSPHONO-D-MANNITOL
C6 H16 N O8 P
LBNVXZROMBUNNQ-KVTDHHQDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, C ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.171
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.12 α = 90.00
b = 118.17 β = 91.87
c = 100.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-09
  • Released Date: 2007-09-11
  • Deposition author(s): Raczynska, J., Olchowy, J., Milewski, S., Rypniewski, W.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4