2PUV

The crystal structure of isomerase domain of glucosamine-6-phosphate synthase from Candida albicans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 2PUV

Classification: TRANSFERASE

Total Structure Weight: 166143.08

Macromolecule Entities
Molecule Chains Length Organism Details
isomerase domain of glutamine-fructose-6-phosphate transaminase (isomerizing) A, B, C, D 367 Candida albicans EC#: 2.6.1.16 IUBMB
Fragment: isomerase domain
Gene Name(s): GFA1 CaO19.1618
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UD1
Query on UD1

A, B, C, D URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
C17 H27 N3 O17 P2
LFTYTUAZOPRMMI-CFRASDGPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
M6R
Query on M6R

A, B, C, D 5-AMINO-5-DEOXY-1-O-PHOSPHONO-D-MANNITOL
C6 H16 N O8 P
LBNVXZROMBUNNQ-KVTDHHQDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, C ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.171
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 66.12 α = 90.00
b = 118.17 β = 91.87
c = 100.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-09
  • Released Date: 2007-09-11
  • Deposition author(s): Raczynska, J., Olchowy, J., Milewski, S., Rypniewski, W.

Revision History

  • Version 1_0: 2007-09-11

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Source and taxonomy, Version format compliance

  • Version 1_2: 2017-10-18

    Type: Refinement description