2PK8

Crystal structure of an uncharacterized protein PF0899 from Pyrococcus furiosus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.208 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution.

Kelley, L.L.Dillard, B.D.Tempel, W.Chen, L.Shaw, N.Lee, D.Newton, M.G.Sugar, F.J.Jenney, F.E.Lee, H.S.Shah, C.Poole, F.L.Adams, M.W.Richardson, J.S.Richardson, D.C.Liu, Z.J.Wang, B.C.Rose, J.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 549-552

  • DOI: https://doi.org/10.1107/S1744309107024049
  • Primary Citation of Related Structures:  
    2PK8

  • PubMed Abstract: 

    The hypothetical protein PF0899 is a 95-residue peptide from the hyperthermophilic archaeon Pyrococcus furiosus that represents a gene family with six members. P. furiosus ORF PF0899 has been cloned, expressed and crystallized and its structure has been determined by the Southeast Collaboratory for Structural Genomics (http://www.secsg.org). The structure was solved using the SCA2Structure pipeline from multiple data sets and has been refined to 1.85 A against the highest resolution data set collected (a presumed gold derivative), with a crystallographic R factor of 21.0% and R(free) of 24.0%. The refined structure shows some structural similarity to a wedge-shaped domain observed in the structure of the major capsid protein from bacteriophage HK97, suggesting that PF0899 may be a structural protein.


  • Organizational Affiliation

    Southeast Collaboratory for Structural Genomics, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein PF0899103Pyrococcus furiosus DSM 3638Mutation(s): 0 
Gene Names: PF0899
UniProt
Find proteins for Q8U2E0 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Explore Q8U2E0 
Go to UniProtKB:  Q8U2E0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8U2E0
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
AUC
Query on AUC

Download Ideal Coordinates CCD File 
B [auth A]GOLD (I) CYANIDE ION
C2 Au N2
DGOHFTDNMSZWDQ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.208 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.08α = 90
b = 47.08β = 90
c = 83.95γ = 120
Software Package:
Software NamePurpose
SOLVEphasing
REFMACrefinement
SERGUIdata collection
MAR345data collection
SCALEPACKdata scaling
SCA2structurephasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2007-05-22
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2017-10-18
    Changes: Refinement description
  • Version 1.4: 2018-01-24
    Changes: Structure summary
  • Version 1.5: 2024-02-21
    Changes: Data collection, Database references, Derived calculations