2PBQ

Crystal structure of molybdenum cofactor biosynthesis (aq_061) From aquifex aeolicus VF5

• PDB DOI: https://doi.org/10.2210/pdb2PBQ/pdb

• Classification: LYASE
• Organism(s): Aquifex aeolicus VF5
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-03-29 Released: 2007-10-02 
• Deposition Author(s): Jeyakanthan, J., Mahesh, S., Kanaujia, S.P., Ramakumar, S., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.225 
• R-Value Work: 0.195 
• R-Value Observed: 0.195 

Literature

Crystal structure of molybdenum cofactor biosynthesis (aq_061) from aquifex aeolicus VF5

Jeyakanthan, J., Mahesh, S., Kanaujia, S.P., Ramakumar, S., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content

• Total Structure Weight: 57.9 kDa 
• Atom Count: 4,479 
• Modelled Residue Count: 511 
• Deposited Residue Count: 534 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Molybdenum cofactor biosynthesis MOG	A, B, C	178	Aquifex aeolicus VF5	Mutation(s): 0
UniProt
Find proteins for O66472 (Aquifex aeolicus (strain VF5)) Explore O66472  Go to UniProtKB:  O66472

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.225 
• R-Value Work: 0.195 
• R-Value Observed: 0.195 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.409	α = 90
b = 113.159	β = 93.39
c = 55.98	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-10-02 
Deposition Author(s): Jeyakanthan, J., Mahesh, S., Kanaujia, S.P., Ramakumar, S., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-10-02
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Derived calculations, Source and taxonomy, Version format compliance
• Version 1.2: 2017-10-18
  Changes: Refinement description
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Refinement description