2P54

a crystal structure of PPAR alpha bound with SRC1 peptide and GW735


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 2P54

Classification: TRANSCRIPTION

Total Structure Weight: 32267.71

Macromolecule Entities
Molecule Chains Length Organism Details
Peroxisome proliferator-activated receptor alpha A 267 Homo sapiens Fragment: PPAR alpha
Gene Name(s): PPARA Gene View NR1C1 PPAR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nuclear receptor coactivator 1 B 12 Homo sapiens EC#: 2.3.1.48 IUBMB
Fragment: SRC1 peptide
Gene Name(s): NCOA1 Gene View BHLHE74 SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
735
Query on 735

A 2-METHYL-2-(4-{[({4-METHYL-2-[4-(TRIFLUOROMETHYL)PHENYL]- 1,3-THIAZOL-5-YL}CARBONYL)AMINO]METHYL}PHENOXY)PROPANOIC ACID
C23 H21 F3 N2 O4 S
ILUPZUOBHCUBKB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
735 EC50: 4 - 20 nM (92 - 100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.204
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 61.26 α = 90.00
b = 103.54 β = 90.00
c = 49.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-14
  • Released Date: 2007-04-24
  • Deposition author(s): Xu, R.X., Xu, H.E., Sierra, M.L., Montana, V.G., Lambert, M.H., Pianetti, P.M.

Revision History

  • 2008-03-13
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance