2P1F

Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase)

Structural Biology Knowledgebase: 2P1F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.139

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2P1F

Classification: HYDROLASE

Total Structure Weight: 32255.22

Macromolecule Entities
Molecule Chains Length Organism Details
Uridine 5'-monophosphate synthase A 291 Homo sapiens Fragment: OMPdecase (Residues 190-480)
Mutation: C115X
Gene Name(s): UMPS Gene View OK/SW-cl.21

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSX
Query on CSX
A L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.139
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.31 α = 90.00
b = 116.88 β = 90.00
c = 61.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-05
  • Released Date: 2007-04-03
  • Deposition author(s): Liu, Y., Tang, H.L., Pai, E.F.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4