2OZT

Crystal structure of O-succinylbenzoate synthase from Thermosynechococcus elongatus BP-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 2OZT

Classification: LYASE

Total Structure Weight: 37834.05

Macromolecule Entities
Molecule Chains Length Organism Details
Tlr1174 protein A 332 Synechococcus elongatus EC#: 4.2.1.113 IUBMB
Mutation: M75M, M140M
Gene Name(s): menC tlr1174
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.178
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 39.64 α = 90.00
b = 113.50 β = 90.00
c = 148.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-27
  • Released Date: 2007-03-13
  • Deposition author(s): Malashkevich, V.N., Bonanno, J., Toro, R., Sauder, J.M., Schwinn, K.D., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Gheyi, T., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • Version 1_0: 2007-03-13

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2014-06-11

    Type: Database references

  • Version 1_4: 2014-08-13

    Type: Database references

  • Version 1_5: 2017-10-18

    Type: Refinement description