2ONJ

Structure of the multidrug ABC transporter Sav1866 from S. aureus in complex with AMP-PNP

Structural Biology Knowledgebase: 2ONJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.254

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2ONJ

Classification: HYDROLASE

Total Structure Weight: 130973.76

Macromolecule Entities
Molecule Chains Length Organism Details
Multidrug export ATP-binding/permease protein SAV1866 A, B 578 Staphylococcus aureus EC#: 3.6.3 IUBMB
Gene Name(s): SAV1866

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: ATP Binding Cassette (ABC) Transporters

Protein Name: Sav1866 Multidrug Transporter


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.254
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 160.96 α = 90.00
b = 104.45 β = 98.23
c = 181.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-24
  • Released Date: 2007-03-13
  • Deposition author(s): Dawson, R.J.P., Locher, K.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4