2OKV

c-Myc DNA Unwinding Element Binding Protein

Structural Biology Knowledgebase: 2OKV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2OKV

Classification: hydrolase

Total Structure Weight: 93936.42

Macromolecule Entities
Molecule Chains Length Organism Details
Probable D-tyrosyl-tRNA(Tyr) deacylase 1 A, B, C, D 209 Homo sapiens EC#: 3.1 IUBMB
Fragment: N-terminal domain
Gene Name(s): DTD1 Gene View C20orf88 DUEB HARS2 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.205
  • Space Group: P 31
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.81 α = 90.00
b = 77.81 β = 90.00
c = 106.42 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-17
  • Released Date: 2007-01-30
  • Deposition author(s): Bae, B., Nair, S.K.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4