2OKJ

The X-ray crystal structure of the 67kDa isoform of Glutamic Acid Decarboxylase (GAD67)

Structural Biology Knowledgebase: 2OKJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2OKJ

Classification: LYASE

Total Structure Weight: 115312.91

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate decarboxylase 1 A, B 504 Homo sapiens EC#: 4.1.1.15 IUBMB
Mutation: K405X
Gene Name(s): GAD1 Gene View GAD GAD67

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLZ
Query on PLZ

B 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- 4-YL}METHYL)AMINO]BUTANOIC ACID
C12 H19 N2 O7 P
DOHWOHSLOVXAFH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ABU
Query on ABU

A, B GAMMA-AMINO-BUTANOIC ACID
GAMMA(AMINO)-BUTYRIC ACID (Synonym)
C4 H9 N O2
BTCSSZJGUNDROE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LLP
Query on LLP
A, B L-PEPTIDE LINKING C14 H22 N3 O7 P LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.186
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.05 α = 90.00
b = 62.74 β = 106.68
c = 101.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-17
  • Released Date: 2007-03-27
  • Deposition author(s): Buckle, A.M., Fenalti, G., Law, R.H.P., Whisstock, J.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4