2OJ9

Structure of IGF-1R kinase domain complexed with a benzimidazole inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 2OJ9

Classification: TRANSFERASE

Total Structure Weight: 35438.66

Macromolecule Entities
Molecule Chains Length Organism Details
Insulin-like growth factor 1 receptor precursor (EC 2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I receptor) (CD221 antigen) A 307 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 982-1286
Gene Name(s): IGF1R Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMI
Query on BMI

A 3-[5-(1H-IMIDAZOL-1-YL)-7-METHYL-1H-BENZIMIDAZOL- 2-YL]-4-[(PYRIDIN-2-YLMETHYL)AMINO]PYRIDIN- 2(1H)-ONE
C22 H19 N7 O
GLTRPHMPCVLOJS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BMI IC50: 390 nM (100) BindingDB

IC50: 390 nM  BindingMOAD
IC50: 390 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.214
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 57.27 α = 90.00
b = 44.29 β = 99.05
c = 65.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-12
  • Released Date: 2007-05-01
  • Deposition author(s): Sack, J.S., Jacobson, B.L.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance