2OFU

x-ray crystal structure of 2-aminopyrimidine carbamate 43 bound to Lck

Structural Biology Knowledgebase: 2OFU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.228

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2OFU

Classification: TRANSFERASE

Total Structure Weight: 32434.26

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene tyrosine-protein kinase LCK A 273 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: Lck kinase domain, residues 229-501
Mutation: Y394X
Gene Name(s): LCK Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1N9
Query on 1N9

A 2,6-DIMETHYLPHENYL 2-(3,5-DIMETHOXY-4-(3- (4-METHYLPIPERAZIN-1-YL)PROPOXY)PHENYLAMINO)PYRIMIDIN- 4-YL(2,4-DIMETHOXYPHENYL)CARBAMATE
C37 H46 N6 O7
VSJXTUFWPAOYLC-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1N9 IC50: 0.6 nM (100) BindingDB

IC50: 3000 nM  BindingMOAD
IC50: 1 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
A L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.228
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 42.43 α = 90.00
b = 73.53 β = 90.00
c = 92.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-04
  • Released Date: 2007-02-27
  • Deposition author(s): Huang, X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4