2ODK

Putative prevent-host-death protein from Nitrosomonas europaea

Structural Biology Knowledgebase: 2ODK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.154
  • R-Value Work: 0.134

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2ODK

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 40785.81

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein A, B, C, D 89 Nitrosomonas europaea Mutation: M1M, M68M
Gene Name(s): NE2111

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.154
  • R-Value Work: 0.134
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.15 α = 90.00
b = 78.87 β = 115.96
c = 54.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-22
  • Released Date: 2007-01-23
  • Deposition author(s): Osipiuk, J., Skarina, T., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update