2O8J

Human euchromatic histone methyltransferase 2

Structural Biology Knowledgebase: 2O8J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.182

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2O8J

Classification: TRANSFERASE

Total Structure Weight: 132427.56

Macromolecule Entities
Molecule Chains Length Organism Details
Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 A, B, C, D 281 Homo sapiens EC#: 2.1.1.43 IUBMB
Fragment: residues 913-1193
Gene Name(s): EHMT2 Gene View BAT8 C6orf30 G9A KMT1C NG36
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B, C, D S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SAH IC50: 2000 nM (100) BindingDB
Ki: 570 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.182
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.59 α = 81.11
b = 70.96 β = 75.13
c = 83.05 γ = 88.39

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-12
  • Released Date: 2007-01-16
  • Deposition author(s): Min, J., Wu, H., Antoshenko, T., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4