2O8E

human MutSalpha (MSH2/MSH6) bound to a G T mispair, with ADP bound to MSH2 only

Structural Biology Knowledgebase: 2O8E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.253

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2O8E

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 230492.55


Macromolecule Entities
Molecule Chains Length Organism Details
DNA mismatch repair protein Msh2 A 934 Homo sapiens Mutation: F42A
Gene Name(s): MSH2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA mismatch repair protein MSH6 B 1022 Homo sapiens Fragment: residues 341-1360
Gene Name(s): MSH6 Gene View GTBP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*GP*GP*CP*TP*AP*GP*G)-3' E 15 synthetic
5'-D(*CP*CP*TP*AP*GP*CP*CP*TP*GP*CP*GP*GP*TP*TP*C)-3' F 15 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.253
  • Space Group: P 43 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 257.51 α = 90.00
b = 257.51 β = 90.00
c = 257.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-12
  • Released Date: 2007-06-05
  • Deposition author(s): Warren, J.J., Pohlhaus, T.J., Changela, A., Modrich, P.L., Beese, L.S.

Revision History

  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor