2O7S

Crystal Structure of the A. thaliana DHQ-dehydroshikimate-SDH-shikimate-NADP(H)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Observed: 0.269

Literature

Macromolecules
Sequence Display for 2O7S

Classification: OXIDOREDUCTASE TRANSFERASE

Total Structure Weight: 58458.81

Macromolecule Entities
Molecule Chains Length Organism Details
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase A 523 Arabidopsis thaliana EC#: 1.1.1.25 IUBMB 4.2.1.10 IUBMB
Mutation: C391X, C424X
Details: contains Dehydroquinate dehydratase (EC 4.2.1.10) and Shikimate dehydrogenase (EC 1.1.1.25)
Gene Name(s): EMB3004 At3g06350 F24P17.18
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DHK
Query on DHK

A 3-DEHYDROSHIKIMATE
C7 H10 O5
YVYKOQWMJZXRRM-UYFOZJQFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TLA
Query on TLA

A L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Observed: 0.269
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 97.45 α = 90.00
b = 97.45 β = 90.00
c = 116.43 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-11
  • Released Date: 2007-11-20
  • Deposition author(s): Christendat, D., Singh, S.A.

Revision History

  • Version 1_0: 2007-11-20

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Derived calculations, Version format compliance