2O5R

Crystal structure of Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate-tRNA ligase 1) (GluRS 1) (TM1351) from Thermotoga maritima at 2.5 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.34 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 2O5R

Classification: LIGASE

Total Structure Weight: 57050.28

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamyl-tRNA synthetase 1 A 481 Thermotoga maritima EC#: 6.1.1.17 IUBMB
Mutation: M1M, M57M, M115M, M132M, M158M, M186M, M203M, M205M, M266M, M320M, M328M, M391M, M409M, M432M
Gene Name(s): gltX1 TM_1351
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 69.95 α = 90.00
b = 69.95 β = 90.00
c = 283.95 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-06
  • Released Date: 2006-12-19
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Version format compliance