2O1E

Crystal Structure of the Metal-dependent Lipoprotein YcdH from Bacillus subtilis, Northeast Structural Genomics Target SR583


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 2O1E

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 71020.66

Macromolecule Entities
Molecule Chains Length Organism Details
YcdH A, B 312 Bacillus subtilis Fragment: residues 22-319
Mutation: M26M, M76M, M87M, M104M, M125M, M284M
Gene Name(s): znuA adcA ycdH BSU02850
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.223
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 45.29 α = 103.70
b = 54.34 β = 100.46
c = 62.84 γ = 96.75

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-28
  • Released Date: 2006-12-12
  • Deposition author(s): Forouhar, F., Zhou, W., Seetharaman, J., Chen, C.X., Fang, Y., Cunningham, K., Ma, L.-C., Janjua, H., Xiao, R., Baran, M.C., Liu, J., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance