2O06

Human spermidine synthase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 2O06

Classification: TRANSFERASE

Total Structure Weight: 68847.38

Macromolecule Entities
Molecule Chains Length Organism Details
Spermidine synthase A, B 304 Homo sapiens EC#: 2.5.1.16 IUBMB
Gene Name(s): SRM Gene View SPS1 SRML1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MTA
Query on MTA

A, B 5'-DEOXY-5'-METHYLTHIOADENOSINE
C11 H15 N5 O3 S
WUUGFSXJNOTRMR-IOSLPCCCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PUT
Query on PUT

A, B 1,4-DIAMINOBUTANE
PUTRESCINE (Synonym)
C4 H12 N2
KIDHWZJUCRJVML-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.168
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 119.10 α = 90.00
b = 135.24 β = 90.00
c = 83.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-27
  • Released Date: 2006-12-12
  • Deposition author(s): Min, J., Wu, H., Zeng, H., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance