2NRY

Crystal structure of IRAK-4

Structural Biology Knowledgebase: 2NRY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2NRY

Classification: TRANSFERASE

Total Structure Weight: 139858.95

Macromolecule Entities
Molecule Chains Length Organism Details
interleukin-1 receptor-associated kinase 4 A, B, C, D 307 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Protein kinase
Mutation: T345X
Gene Name(s): IRAK4 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
STU
Query on STU

A, B, C, D STAUROSPORINE
C28 H26 N4 O3
HKSZLNNOFSGOKW-FYTWVXJKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
STU IC50: 34 nM (100) BindingDB
Kd: 1.7 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, B, C, D L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.209
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.50 α = 90.00
b = 139.75 β = 123.76
c = 87.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-02
  • Released Date: 2006-12-12
  • Deposition author(s): Wang, Z., Liu, J., Walker, N.P.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4