2NRU

Crystal structure of IRAK-4

Structural Biology Knowledgebase: 2NRU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.233

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2NRU

Classification: TRANSFERASE

Total Structure Weight: 140266.75

Macromolecule Entities
Molecule Chains Length Organism Details
Interleukin-1 receptor-associated kinase 4 A, B, C, D 307 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Protein kinase
Mutation: T345X, S346X
Gene Name(s): IRAK4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
T12
Query on T12

A, B, C, D 1-(3-HYDROXYPROPYL)-2-[(3-NITROBENZOYL)AMINO]- 1H-BENZIMIDAZOL-5-YL PIVALATE
C22 H24 N4 O6
CEAYRKIZESVQSN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
T12 Ki: 1.2 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, B, C, D L-PEPTIDE LINKING C4 H10 N O6 P THR
SEP
Query on SEP
A, B, C, D L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.233
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 145.30 α = 90.00
b = 141.29 β = 125.80
c = 88.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-02
  • Released Date: 2006-12-12
  • Deposition author(s): Wang, Z., Liu, J., Walker, N.P.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4