NMR Ensemble

2LZK

NMR solution structure of an N2-guanine DNA adduct derived from the potent tumorigen dibenzo[a,l]pyrene: Intercalation from the minor groove with ruptured Watson-Crick base pairing

Structural Biology Knowledgebase: 2LZK SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500
  • Conformers Submitted: 5
  • Selection Criteria: Structures with the Least Restraint Violations

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2LZK

Classification: DNA

Total Structure Weight: 7062.86

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3') A 11 synthetic
DNA (5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3') B 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
14L
Query on 14L

A (11S,12S,13S)-11,12,13,14-tetrahydronaphtho[1,2,3,4- pqr]tetraphene-11,12,13-triol
C24 H18 O3
HWQNIRBJKZENJU-IGKWTDBASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500
  • Conformers Submitted: 5
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-10-04
  • Released Date: 2012-11-21
  • Deposition author(s): Tang, Y., Liu, Z., Ding, S., Lin, C.H., Cai, Y., Rodriguez, F.A., Sayer, J.M., Jerina, D.M., Amin, S., Broyde, S., Geacintov, N.E.

Revision History

  • 2013-02-20
    Type: Citation | Details: Citation update
  • 2012-11-28
    Type: Citation | Details: Citation update