2JID

Human Dipeptidyl peptidase IV in complex with 1-(3,4-Dimethoxy-phenyl) -3-m-tolyl-piperidine-4-ylamine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 2JID

Classification: HYDROLASE

Total Structure Weight: 172842.64

Macromolecule Entities
Molecule Chains Length Organism Details
DIPEPTIDYL PEPTIDASE 4 A, B 736 Homo sapiens EC#: 3.4.14.5 IUBMB
Fragment: RESIDUES 31-766
Gene Name(s): DPP4 Gene View ADCP2 CD26
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GVB
Query on GVB

A, B (3R,4S)-1-(3,4-DIMETHOXYPHENYL)-3-(3-METHYLPHENYL)PIPERIDIN- 4-AMINE
C20 H26 N2 O2
DQJXBZGPJVSWFI-ROUUACIJSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.223
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.25 α = 90.00
b = 66.82 β = 90.00
c = 423.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-28
  • Released Date: 2008-05-27
  • Deposition author(s): Hennig, M., Stihle, M., Luebbers, T., Thoma, R.

Revision History

  • 2012-08-29
    Type: Database references, Derived calculations, Non-polymer description, Other, Version format compliance