2IVS

CRYSTAL STRUCTURE OF NON-PHOSPHORYLATED RET TYROSINE KINASE DOMAIN

Structural Biology Knowledgebase: 2IVS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2IVS

Classification: TRANSFERASE

Total Structure Weight: 72351.60

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET A, B 314 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: TYROSINE KINASE DOMAIN, UNP RESIDUES 705-1013
Details: 5 N-TERMINAL VECTOR-DERIVED RESIDUES GPLSL
Gene Name(s): RET Gene View CDHF12 CDHR16 PTC RET51
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACK
Query on ACK

A, B (3AR,4R,6R,6AR)-4-(6-AMINO-9H-PURIN-9-YL)- 6-(HYDROXYMETHYL)TETRAHYDROFURO[3,4-D][1,3,2]DIOXAPHOSPHOL- 2-OL 2-OXIDE
C10 H12 N5 O6 P
KMYWVDDIPVNLME-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A, B FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.180
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 50.40 α = 90.00
b = 80.22 β = 100.09
c = 79.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-06-16
  • Released Date: 2006-08-14
  • Deposition author(s): Knowles, P.P., Murray-Rust, J., Mcdonald, N.Q.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4