2IUW

CRYSTAL STRUCTURE OF HUMAN ABH3 IN COMPLEX WITH IRON ION AND 2-OXOGLUTARATE

Structural Biology Knowledgebase: 2IUW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.141

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2IUW

Classification: OXIDOREDUCTASE

Total Structure Weight: 28377.54

Macromolecule Entities
Molecule Chains Length Organism Details
ALKYLATED REPAIR PROTEIN ALKB HOMOLOG 3 A 238 Homo sapiens EC#: 1.14.11 IUBMB
Fragment: RESIDUES 70-286
Details: 2-MERCAPTOETHANOLS COVALENTLY LINKED TO C91, C110, AND C201
Gene Name(s): ALKBH3 Gene View ABH3 DEPC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AKG
Query on AKG

A 2-OXOGLUTARIC ACID
C5 H6 O5
KPGXRSRHYNQIFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LED
Query on LED
A L-PEPTIDE LINKING C6 H11 N O3 LEU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.141
  • Space Group: I 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.96 α = 90.00
b = 119.96 β = 90.00
c = 40.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-06-07
  • Released Date: 2006-07-26
  • Deposition author(s): Sundheim, O., Vagbo, C.B., Bjoras, M., Desousa, M.M.L., Talstad, V., Aas, P.A., Drablos, F., Krokan, H.E., Tainer, J.A., Slupphaug, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4