2ICJ

The crystal structure of human isopentenyl diphophate isomerase

Structural Biology Knowledgebase: 2ICJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 2ICJ

Classification: ISOMERASE

Total Structure Weight: 27018.41

Macromolecule Entities
Molecule Chains Length Organism Details
Isopentenyl-diphosphate delta isomerase A 233 Homo sapiens EC#: 5.3.3.2 IUBMB
Gene Name(s): IDI1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.197
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.83 α = 90.00
b = 47.39 β = 90.00
c = 116.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-12
  • Released Date: 2007-03-20
  • Deposition author(s): Zheng, W., Bartlam, M., Rao, Z.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4