2I0E

Structure of catalytic domain of human protein kinase C beta II complexed with a bisindolylmaleimide inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 2I0E

Classification: TRANSFERASE

Total Structure Weight: 82473.79

Macromolecule Entities
Molecule Chains Length Organism Details
Protein Kinase C-beta II A, B 353 Homo sapiens EC#: 2.7.11.13 IUBMB
Fragment: Catalytic Domain, residues 321-673
Mutation: T500X, ΔR621, D622C, K623G, D625N, T626A, S627E, K631R, E632F, Q636H, V638P, E639V, T641X, T643P, K645Q, L646E, F647V, M649R, L651I, N654S, A657E, S660X, Y661F, T662V, P664S, V667L, I668K, N669P, V670E
Gene Name(s): PRKCB Gene View PKCB PRKCB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PDS
Query on PDS

A, B 3-{1-[3-(DIMETHYLAMINO)PROPYL]-2-METHYL-1H- INDOL-3-YL}-4-(2-METHYL-1H-INDOL-3-YL)-1H- PYRROLE-2,5-DIONE
C27 H28 N4 O2
OHIVGFJSFMOMNC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PDS N/A in BindingDB
N/A in BindingMoad
Ki: 2 nM  PDBbind
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, B L-PEPTIDE LINKING C4 H10 N O6 P THR
SEP
Query on SEP
A, B L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.235
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 93.10 α = 90.00
b = 131.42 β = 90.00
c = 83.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-08-10
  • Released Date: 2006-11-14
  • Deposition author(s): Grodsky, N.B., Love, R.L.

Revision History

  • Version 1_0: 2006-11-14

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance