2HMT

Diamond-shaped octameric ring structure of an RCK domain with NADH bound

Structural Biology Knowledgebase: 2HMT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2HMT

Classification: TRANSPORT PROTEIN

Total Structure Weight: 33484.07

Macromolecule Entities
Molecule Chains Length Organism Details
YuaA protein A, B 144 Bacillus subtilis Fragment: RCK core domain (KTN), residues 1-144
Mutation: C22V
Gene Name(s): ktrA yuaA BSU31090
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.232
  • Space Group: P 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 127.40 α = 90.00
b = 127.40 β = 90.00
c = 50.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-07-11
  • Released Date: 2006-09-26
  • Deposition author(s): Albright, R.A., Morais-Cabral, J.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4