2H94

Crystal Structure and Mechanism of human Lysine-Specific Demethylase-1

Structural Biology Knowledgebase: 2H94 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2H94

Classification: OXIDOREDUCTASE

Total Structure Weight: 75304.52

Macromolecule Entities
Molecule Chains Length Organism Details
Lysine-specific histone demethylase 1 A 664 Homo sapiens EC#: 1 IUBMB
Gene Name(s): KDM1A Gene View AOF2 KDM1 KIAA0601 LSD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HG
Query on HG

A MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.229
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 187.94 α = 90.00
b = 187.94 β = 90.00
c = 108.74 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-06-08
  • Released Date: 2006-07-04
  • Deposition author(s): Stavropoulos, P., Blobel, G., Hoelz, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4