2GZD

Crystal Structure of Rab11 in Complex with Rab11-FIP2

  • Classification: Protein Transport
  • Deposited: 2006-05-11 Released: 2006-08-15
  • Deposition author(s): Khan, A.R.
  • Organism: Homo sapiens
  • Expression System: Escherichia coli BL21(DE3), Escherichia coli BL21(DE3)
  • Mutation(s): 3

Structural Biology Knowledgebase: 2GZD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2GZD

Classification: Protein Transport

Total Structure Weight: 64864.78

Macromolecule Entities
Molecule Chains Length Organism Details
Ras-related protein Rab-11A A, B 173 Homo sapiens EC#: 3.6.5.2 IUBMB
Fragment: G protein domain
Mutation: Q70L, M120M
Gene Name(s): RAB11A Gene View RAB11
Rab11 family-interacting protein 2 C, D 107 Homo sapiens Fragment: Rab11-FIP2 Rab-binding domain
Mutation: M489M
Gene Name(s): RAB11FIP2 Gene View KIAA0941

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A, B GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.226
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.36 α = 90.00
b = 91.15 β = 90.00
c = 113.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-11
  • Released Date: 2006-08-15
  • Deposition author(s): Khan, A.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4