2GU1

Crystal structure of a zinc containing peptidase from vibrio cholerae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 2GU1

Classification: HYDROLASE

Total Structure Weight: 40768.75

Macromolecule Entities
Molecule Chains Length Organism Details
Zinc peptidase A 361 Vibrio cholerae EC#: 3.4 IUBMB
Gene Name(s): VC_0503
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.230
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 49.38 α = 90.00
b = 85.40 β = 112.96
c = 53.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-28
  • Released Date: 2006-07-04
  • Deposition author(s): Sugadev, R., Kumaran, D., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • Version 1_0: 2006-07-04

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance