2GJ3

Crystal structure of the FAD-containing PAS domain of the protein NifL from Azotobacter vinelandii.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.04 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.154

Literature

Macromolecules
Sequence Display for 2GJ3

Classification: TRANSFERASE

Total Structure Weight: 29088.36

Macromolecule Entities
Molecule Chains Length Organism Details
Nitrogen fixation regulatory protein A, B 120 Azotobacter vinelandii EC#: 2.7.13.3 IUBMB
Fragment: PAS1 of NifL containing FAD (Residues 21-140)
Gene Name(s): nifL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EOH
Query on EOH

B ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.04 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.154
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 68.11 α = 90.00
b = 68.11 β = 90.00
c = 302.06 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-30
  • Released Date: 2007-03-06
  • Deposition author(s): Key, J., Hefti, M., Purcell, E., Moffat, K.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance