2GFF

Crystal Structure of Yersinia pestis LsrG

Structural Biology Knowledgebase: 2GFF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2GFF

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 24975.25

Macromolecule Entities
Molecule Chains Length Organism Details
LsrG Protein A, B 106 Yersinia pestis Mutation: M1M, M82M, M95M
Gene Name(s): lsrG YPO0407 y3774 YP_3774

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.197
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 56.17 α = 90.00
b = 56.17 β = 90.00
c = 119.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-21
  • Released Date: 2007-04-03
  • Deposition author(s): de Carvalho-Kavanagh, M., Schafer, J., Lekin, T., Toppani, D., Chain, P., Lao, V., Motin, V., Garcia, E., Segelke, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4