2GD5

Structural basis for budding by the ESCRTIII factor CHMP3

Structural Biology Knowledgebase: 2GD5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.259

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2GD5

Classification: PROTEIN TRANSPORT

Total Structure Weight: 84007.20

Macromolecule Entities
Molecule Chains Length Organism Details
Charged multivesicular body protein 3 A, B, C, D 179 Homo sapiens Mutation: M27M, M67M, M84M, M89M, M91M, M111M, M114M, M127M, M134M, M135M, M157M, M163M
Gene Name(s): CHMP3 Gene View CGI149 NEDF VPS24 CGI-149

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.259
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 33.58 α = 68.68
b = 72.57 β = 83.61
c = 89.23 γ = 76.70

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-15
  • Released Date: 2006-06-13
  • Deposition author(s): Muziol, T.M., Pineda-Molina, E., Ravelli, R.B., Zamborlini, A., Usami, Y., Gottlinger, H., Weissenhorn, W.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4