2G48

crystal structure of human insulin-degrading enzyme in complex with amylin

Structural Biology Knowledgebase: 2G48 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2G48

Classification: HYDROLASE

Total Structure Weight: 237426.94

Macromolecule Entities
Molecule Chains Length Organism Details
Insulin-degrading enzyme A, B 990 Homo sapiens EC#: 3.4.24.56 IUBMB
Mutation: E111Q
Gene Name(s): IDE Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Islet amyloid polypeptide C, D 37 Homo sapiens Fragment: residues 34-70
Gene Name(s): IAPP Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DIO
Query on DIO

A, B 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.196
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 262.28 α = 90.00
b = 262.28 β = 90.00
c = 91.11 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-21
  • Released Date: 2006-10-24
  • Deposition author(s): Shen, Y., Tang, W.-J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4