2FPB

Structure of Strictosidine Synthase, the Biosynthetic Entry to the Monoterpenoid Indole Alkaloid Family

Structural Biology Knowledgebase: 2FPB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FPB

Classification: Lyase

Total Structure Weight: 72560.04

Macromolecule Entities
Molecule Chains Length Organism Details
Strictosidine Synthase A, B 322 Rauvolfia serpentina EC#: 4.3.3.2 IUBMB
Mutation: I65M, L116M, M180M, I190M, L203M, M276M
Gene Name(s): STR1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TSS
Query on TSS

A, B 2-(1H-INDOL-3-YL)ETHANAMINE
TRYPTAMINE (Synonym)
C10 H12 N2
APJYDQYYACXCRM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.164
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 148.94 α = 90.00
b = 148.94 β = 90.00
c = 121.34 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-16
  • Released Date: 2006-05-23
  • Deposition author(s): Panjikar, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor