2F96

2.1 A crystal structure of Pseudomonas aeruginosa rnase T (Ribonuclease T)

Structural Biology Knowledgebase: 2F96 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.158

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2F96

Classification: Structural genomics Hydrolase

Total Structure Weight: 50209.18

Macromolecule Entities
Molecule Chains Length Organism Details
Ribonuclease T A, B 224 Pseudomonas aeruginosa EC#: 3.1.13 IUBMB
Gene Name(s): rnt PA3528

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.158
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.88 α = 90.00
b = 76.64 β = 93.55
c = 61.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-05
  • Released Date: 2006-02-14
  • Deposition author(s): Zheng, H., Chruszcz, M., Cymborowski, M., Wang, Y., Gorodichtchenskaia, E., Skarina, T., Guthrie, J., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-10-05
    Type: Entry authorship | Details: --
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4