2F0Y

Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate and hydantoin derivative

Structural Biology Knowledgebase: 2F0Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2F0Y

Classification: TRANSFERASE

Total Structure Weight: 94194.09

Macromolecule Entities
Molecule Chains Length Organism Details
Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit A 379 Homo sapiens EC#: 2.3.1.n3 IUBMB 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Gene Name(s): FNTA Gene View
Protein farnesyltransferase beta subunit B 437 Homo sapiens EC#: 2.5.1.58 IUBMB
Gene Name(s): FNTB Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3MN
Query on 3MN

B 3-({3-[3-(1H-IMIDAZOL-1-YL)PROPYL]-5-METHYL- 5-(1-NAPHTHYL)-2,4-DIOXOIMIDAZOLIDIN-1-YL}METHYL)BENZONITRILE
C28 H25 N5 O2
QRBLNORQTYKILD-MUUNZHRXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FPP
Query on FPP

B FARNESYL DIPHOSPHATE
C15 H28 O7 P2
VWFJDQUYCIWHTN-YFVJMOTDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.212
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 171.89 α = 90.00
b = 171.89 β = 90.00
c = 71.37 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-14
  • Released Date: 2006-11-14
  • Deposition author(s): Kim, K.H., Lee, J., Kim, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4